cmaple::ModelBase Class Reference

#include <modelbase.h>

Public Types
enum	SubModel {   JC , GTR , UNREST , GTR20 ,   NONREV , LG , WAG , JTT ,   Q_PFAM , Q_BIRD , Q_MAMMAL , Q_INSECT ,   Q_PLANT , Q_YEAST , JTTDCMUT , DCMUT ,   VT , PMB , BLOSUM62 , DAYHOFF ,   MTREV , MTART , MTZOA , MTMET ,   MTVER , MTINV , MTMAM , FLAVI ,   HIVB , HIVW , FLU , RTREV ,   CPREV , NQ_PFAM , NQ_BIRD , NQ_MAMMAL ,   NQ_INSECT , NQ_PLANT , NQ_YEAST , DEFAULT ,   UNKNOWN }

Detailed Description

Base class of evolutionary models

Member Enumeration Documentation

SubModel

enum cmaple::ModelBase::SubModel

List of substitution models. See Substitution models for references of those models.

Enumerator
JC	See DNA models
GTR	See DNA models
UNREST	See DNA models
GTR20	See Protein models
NONREV	See Protein models
LG	See Protein models
WAG	See Protein models
JTT	See Protein models
Q_PFAM	See Protein models
Q_BIRD	See Protein models
Q_MAMMAL	See Protein models
Q_INSECT	See Protein models
Q_PLANT	See Protein models
Q_YEAST	See Protein models
JTTDCMUT	See Protein models
DCMUT	See Protein models
VT	See Protein models
PMB	See Protein models
BLOSUM62	See Protein models
DAYHOFF	See Protein models
MTREV	See Protein models
MTART	See Protein models
MTZOA	See Protein models
MTMET	See Protein models
MTVER	See Protein models
MTINV	See Protein models
MTMAM	See Protein models
FLAVI	See Protein models
HIVB	See Protein models
HIVW	See Protein models
FLU	See Protein models
RTREV	See Protein models
CPREV	See Protein models
NQ_PFAM	See Protein models
NQ_BIRD	See Protein models
NQ_MAMMAL	See Protein models
NQ_INSECT	See Protein models
NQ_PLANT	See Protein models
NQ_YEAST	See Protein models
DEFAULT	Default - GTR for DNA, and LG for Protein data.
UNKNOWN	Unknown model.

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The documentation for this class was generated from the following file:

• model/modelbase.h