Web Server Tutorial

A quick starting guide for the IQ-TREE Web Server.

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Assessing Phylogenetic Assumptions

This guide is about evaluating the suitability of the data for phylogenetic analysis.

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Developer Guide

This guide gives developers an overview of IQ-TREE software design, data structures and discusses possibility to incorporate new models into IQ-TREE.

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Analyzing Big Data

Hints and strategies to analyze big alignments with >= 1000 sequences or >= 10,000 sites.

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