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CMAPLE 1.0.0
C++ MAximum Parsimonious Likelihood Estimation
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This is the complete list of members for cmaple::Alignment, including all inherited members.
| Alignment() | cmaple::Alignment | |
| Alignment(std::istream &aln_stream, const std::string &ref_seq="", const InputType format=IN_AUTO, const cmaple::SeqRegion::SeqType seqtype=cmaple::SeqRegion::SEQ_AUTO) | cmaple::Alignment | |
| Alignment(const std::string &aln_filename, const std::string &ref_seq="", const InputType format=IN_AUTO, const cmaple::SeqRegion::SeqType seqtype=cmaple::SeqRegion::SEQ_AUTO) | cmaple::Alignment | |
| IN_AUTO enum value | cmaple::Alignment | |
| IN_FASTA enum value | cmaple::Alignment | |
| IN_MAPLE enum value | cmaple::Alignment | |
| IN_PHYLIP enum value | cmaple::Alignment | |
| IN_UNKNOWN enum value | cmaple::Alignment | |
| InputType enum name | cmaple::Alignment | |
| read(std::istream &aln_stream, const std::string &ref_seq="", const InputType format=IN_AUTO, const cmaple::SeqRegion::SeqType seqtype=cmaple::SeqRegion::SEQ_AUTO) | cmaple::Alignment | |
| read(const std::string &aln_filename, const std::string &ref_seq="", const InputType format=IN_AUTO, const cmaple::SeqRegion::SeqType seqtype=cmaple::SeqRegion::SEQ_AUTO) | cmaple::Alignment | |
| write(std::ostream &aln_stream, const InputType &format=IN_MAPLE) | cmaple::Alignment | |
| write(const std::string &aln_filename, const InputType &format=IN_MAPLE, const bool overwrite=false) | cmaple::Alignment | |
| ~Alignment() | cmaple::Alignment |
1.9.8